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H
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Y
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Z
Symbols
1-001
1-002
2-001
2-002
2-003
2-004
3-001
A
absolute path
adjusted branch
annex
annex UUID
B
bare Git repositories
bash
Bitbucket
branch
broken symlink
C
Chapter
1. DataLad datasets
10. Advanced Options
2. DataLad Run
3. git-annex
4. Collaboration
5. Configuration
6. Data analysis (YODA)
7. Software container
8. Third party infrastructure
9. Help yourself
Special purpose showrooms
Cheatsheet
checksum
clone
Command Line
commit
commit message
compute node
conda
Config files
.datalad/config
.git/config
.gitattributes
.gitmodules
container
container image
container recipe
crippled filesystem
D
datalad command
addurls
clone
containers-add
containers-list
containers-remove
containers-run
copy-file
create
create-sibling-github
create-sibling-gitlab
create-sibling-ria
datalad subdatasets
diff
drop
,
[1]
get
install
push
remove
rerun
run
run-procedure
save
save --to-git
siblings
status
uninstall
unlock
update
wtf
DataLad dataset
DataLad extension
DataLad subdataset
DataLad superdataset
dataset ID
Debian
Debugging
debugging
Docker
Docker-Hub
DOI
E
environment variable
,
[1]
,
[2]
ephemeral clone
extensions
extractor
F
force-push
fork
G
GIN
Git
git config
Git config file
Git identity
git-annex
git-annex branch
GitHub
Gitk
GitLab
globbing
H
high-performance computing (HPC)
high-throughput computing (HTC)
hooks
http
https
Human Connectome Project (HCP)
L
log level
logging
M
Make
Makefile
master
merge
metadata
N
nano
nesting
,
[1]
O
object-tree
OHBM 2020 Poster
P
paths
permissions
pip
procedures
provenance
publication dependency
R
relative path
remote
Remote Indexed Archive (RIA) store
,
[1]
result hooks
run procedure
run record
run-procedures
S
sed
shasum
shebang
Shell
shell
sibling
Singularity
Singularity-Hub
software container
,
[1]
special remote
squash
SSH
SSH key
SSH server
stderr
stdin
stdout
submodule
symlink
(broken)
T
tab completion
,
[1]
tag
Terminal
terminal
the DataLad superdataset ///
tig
U
Ubuntu
Usecase
Basic provenance tracking
Collaboration
Machine Learning Analysis
Remote Indexed Archive (RIA) store
Reproducible Neuroimaging
Scaling up: 80TB and 15 million files
Student supervision
Using Globus as data store
reproducible paper
UUID
V
version control
vim
virtual environment
W
WSL
Y
YODA principles
Z
zsh